Part of the Biochemistry, Biophysics, and Structural Biology Commons

Works in Biochemistry, Biophysics, and Structural Biology

2024

Identification of Regulatory Elements in the Untranslated Regions of Streptolysin S Associated Gene A Messenger RNA from Group A Streptococcus, Cameron R. Carroll, Sara G. Nibar, Alexis S. Brown, Lauren R. Angello, Gabriela C. Pérez-Alvarado, Brian M. Lee
Journal of the South Carolina Academy of Science

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2023

Identification of a Small Regulatory RNA UspS Associated with the Universal Stress Protein in Lactobacillus Species, Zarah M. Fowler, Sasha S. Bronovitskiy, Finn K. Rose, Brian M. Lee
Journal of the South Carolina Academy of Science

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Mutating Tetur02g09850 Originated From Spider Mites to Enhance Crystallization, Hayley Cash
Senior Theses

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Traffic Lights for Catalysis: Stimuli-Responsive Molecular and Extended Catalytic Systems, Grace C. Thaggard, Johanna Haimeri, Roland A. Fischer Prof. Dr., Kyoung Chul Park, Natalia B. Shustova Prof. Dr.
Faculty Publications

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PC-04 The Role of SARS-CoV Non-structural protein 1 in Regulating RNA stability, Kevin L. Xiong, Kaitlin M. Bridges
SC Upstate Research Symposium

PC-02 Interaction Between the Viral RNA Leader Sequence and nsp1 in SARS Coronavirus, Jonathan L. Cromer, Kaitlin M. Caughman, Anita Nag Dr.
SC Upstate Research Symposium

Combinatory Effects of microRNA modulation and Viral Oncolysis on Pancreatic ductal adenocarcinoma, Youssef M. Mostakim
SC Upstate Research Symposium

2022

3,6-dimethoxyxanthone from 2,2’,4,4’- tetrahydroxy-benzophenone via Microwave-Assisted Annulation, Sarah E. Knisely, Faith R. Rosario, Salem F. Gebeyehu, Paige E. Heiple, Robert E. Lee Sr
Journal of the South Carolina Academy of Science

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Understanding Rapid Intercalation Materials One Parameter at a Time, Wessel van den Bergh, Morgan Stefik
Faculty Publications

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Luminescence and Scintillation in the Niobium Doped Oxyfluoride Rb4Ge5O9F6:Nb, Darrone Carone, Vladislav V. Klepov, Scott T. Misture, Joseph C. Schaeperkoetter, Luiz G. Jacobsohn, Mina Aziziha, Juliano Schorne-Pinto, Stuart A. J. Thomson, Adrian T. Hines, Theodore M. Besmann, Hans Conrad zur Loye
Faculty Publications

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Luminescence and Scintillation in the Niobium Doped Oxyfluoride Rb4Ge5O9F6:Nb, Darren Carone, Vladislav V. Klepov, Scott T. Misture, Joseph C. Schaeperkoetter, Luiz G. Jacobsohn, Mina Aziziha, Juliano Schorne-Pinto, Stuart A. J. Thomson, Adrian T. Hines, Theodore M. Besmann, Hans Conrad zur Loye
Faculty Publications

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Luminescence and Scintillation in the Niobium Doped Oxyfluoride Rb4Ge5O9F6:Nb, Darren Carone, Vladislav V. Klepov, Scott T. Misture, Joseph C. Schaeperkoetter, Luiz G. Jacobsohn, Mina Aziziha, Juliano Schorne-Pinto, Stuart A. J. Thomson, Adrian T. Hines, Theodore M. Besmann, Hans Conrad zur Loye
Faculty Publications

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In Situ Recording of Mars Soundscape, S. Maurice, B. Chide, N. Murdoch, R. D. Lorenz, D. Mimoun, R. C. Wiens, A. Stott, X. Jacob, T. Bertrand, F. Montmessin, N. L. Lanza, C. Alvarez-Llamas, Stanley M. Angel, M. Aung, J. Balaram, O. Beyssac, A. Cousin, G. Delory, O. Forni, T. Fouchet, Et. Al.
Faculty Publications

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Functional Analysis of STN1 Winged-Helix (wH) Domains, Anna Bazell
Senior Theses

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One Planet: One Health. A Call to Support the Initiative on a Global Science-Policy Body on Chemicals and Waste, Werner Brack, Damia Barcelo Culleres, Alistair B.A. Boxall, Helene Budzinski, Sara Castiglioni, Adrian Covaci, Valeria Dulio, Beate I. Escher, Peter Fantke, Faith Kandie, Despo Fatta-Kassinos, Felix J. Hernandez, Klara Hilscherova, Juliane Hollender, Henner Hollert, Annika Jahnke, Barbara Kasprzyk-Hordern, Stuart J. Khan, Andreas Kortenkamp, Klaus Kuemmerer, Brice Lalonde, Marja H. Lamoree, Yves Levi, Pablo Antonio Lara Martin, Cassiana C. Montagner, Christian Mougin, Titus Msagati, Joerg Oehlmann, Leo Posthuma, Malcolm Reid, Martin Reinhard, Susan D. Richardson, Et. Al.
Faculty Publications

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Amorphization of Pseudocapacitive T−nb2o5 Accelerates Lithium Diffusivity as Revealed Using Tunable Isomorphic Architectures, Wessel van den Bergh, Sean Wechsler, Hasala Nadeesini Lokupitiya, Lauren Jarocha, Kwangnam Kim, James Chapman, Kyoung E. Kweon, Brandon C. Wood, Steve Heald, Morgan Stefik PhD
Faculty Publications

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Investigation of Metastable Low Dimensional Halometallates, Navindra Keerthisinghe, Matthew S. Christian, Anna A. Berseneva, Gregory Morrison, Vladislav V. Klepov, Mark D. Smith, Hans Conrad zur Loye
Faculty Publications

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2021

Single-Variable Porous Nanomaterial Series From Polymer Structure-Directing Agents, Morgan Stefik
Faculty Publications

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Characterization of pH – Responsive Nanocage Based on the Ferritin Iron Storage Protein, Satyam Singh
Theses and Dissertations

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AhR Expression on Rorc-Expressing Immune Cells is Essential for I3C-Mediated Protection Against Colitis, Michal C. Williams
Senior Theses

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Beyond Structural Motifs: The Frontier of Actinide-Containing Metal–Organic Frameworks, Corey R. Martin, Gabrielle A. Leith, Natalia B. Shustova
Faculty Publications

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Beyond Structural Motifs: The Frontier of Actinide-Containing Metal–Organic Frameworks, Corey R. Martin, Gabrielle A. Leith, Natalia B. Shustova Prof. Dr.
Faculty Publications

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Host–Guest Interactions in a Metal–Organic Framework Isoreticular Series for Molecular Photocatalytic CO2 Reduction, Philip M. Stanley, Johanna Haimerl, Christopher Thomas, Alexander Urstoeger, Michael Schuster Prof. Dr., Natalia B. Shustova Prof. Dr., Angela Casini Prof. Dr., Bernhard Rieger Prof. Dr., Julien Warnan Dr., Roland A. Fischer Prof. Dr.
Faculty Publications

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Lions, Tigers, and Hemes - Oh My! A Dynamic Look at the Electronic Effects of Porphyrin Substitution on Cytochrome P450 OleT, Alexis J. Holwerda
Senior Theses

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Purification and Functional Characterization of the Iron-Responsive Transcription Factor Aft1 from C. glabrata, Jade Ikahihifo-Bender
Senior Theses

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Broken-Hearted” Carbon Bowl via Electron Shuttle Reaction: Energetics and Electron Coupling, Gabrielle A. Leith, Allison M. Rice, Brandon J. Yarbrough, Preecha Kittikhunnatham, Abijai Mathur, Nicholas A. Morris, Megan J. Francis, Anna A. Berseneva, Poonam Dhull, Richard D. Adams, M. Victoria Bobo, Aaron A. Vannucci, Mark D. Smith, Sophya Garashchuk, Natalia B. Shustova
Faculty Publications

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The Supercam Instrument Suite on the Mars 2020 Rover: Science Objectives and Mast-Unit Description, S. Maurice, R. C. Wiens, P. Bernardi, P. Caïs, S. Robinson, T. Nelson, O. Gasnault, J. -M. Reess, M. Deleuze, F. Rull, J. -A. Manrique, S. Abbaki, R. B. Anderson, Y. André, Stanley M. Angel, G. Arana, T. Battault, P. Beck, K. Benzerara, S. Bernard, Et. Al.
Faculty Publications

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Self-Assembled Thermoresponsive Nanogel From Grafted Hyaluronic Acid as a Biocompatible Delivery Platform for Curcumin With Enhanced Drug Loading and Biological Activities, Jittima Amie Luckanagul, Pahweenvaj Ratnatilaka Na Bhuket, Chawanphat Muangnoi, Pranee Rojsitthisak, Qian Wang, Pornchai Rojsitthisak
Faculty Publications

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The Effect of Alcalase Concentration on the Proteins from the Shells of Litopenaeus Setiferus (White Shrimp), Liam T. Quan
Journal of the South Carolina Academy of Science

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2020

Natalia Shustova Answers Questions About 15 Years of Research on Covalent Organic Frameworks, Natalia B. Shustova Prof. Dr.
Faculty Publications

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A Highly Elastic and Fatigue-Resistant Natural Protein-Reinforced Hydrogel Electrolyte for Reversible-Compressible Quasi-Solid-State Supercapacitors, Jingya Nan, Gaitong Zhang, Tianyu Zhu, Zhongkai Wang, Lijun Wang, Hongsheng Wang, Fuxiang Chu, Chunpeng Wang, Chuanbing Tang
Faculty Publications

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Heterometallic Multinuclear Nodes Directing MOF Electronic Behavior, Otega A. Ejegbavwo, Anna A. Berseneva, Corey R. Martin, Gabrielle A. Leith, Shubham Pandey, Amy J. Brandt, Kyoung Chul Park, Abhijai Mathur, Sharfa Farzandh, Vladislav V. Klepov, Brittany J. Heiser, Mvs Chandrashekhar, Stavros G. Karakalos, Mark D. Smith, Simon R. Phillpot, Sophya Garashchuk, Donna A. Chen, Natalia B. Shustova Prof. Dr.
Faculty Publications

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A Broadly Distributed, Novel Class of Diiron Enzymes Involved in Para-Aminobenzoate Synthesis, Joseph M. Zambelas
Senior Theses

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2019

ROMPI-CDSA: Ring-Opening Metathesis Polymerization-Induced Crystallization-Driven Self-Assembly of Metallo-Block Copolymers, Ye Sha, Md Anisur Rahman, Tianyu Zhu, Yujin Cha, C Wayne McAlister, Chuanbing Tang
Faculty Publications

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Lignin Biopolymers in the Age of Controlled Polymerization, Mitra S. Ganewatta, Hasala N. Lokupitiya, Chuanbing Tang
Faculty Publications

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Cellular Localization of RAD51D Mutant Proteins and the Application of Art to Increase Scientific Literacy in America, Claire L. Chabot
Senior Theses

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Synthetic Lectins, a Diagnostic and Prognostic Tool for Detecting Glycans in Breast Cancer, Daniel James Gordon
Theses and Dissertations

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Characterizing Aft1/2-Grx3/4 Interaction and the Role of Bol2 During Iron Regulation in Saccharomyces cerevisiae, William Rivers
Senior Theses

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Generalizing Metallocene Mechanochemistry to Ruthenocene Mechanophores, Ye Sha, Yudi Zhang, Enhua Xu, C Wayne McAlister, Tianyu Zhu, Stephen L. Craig, Chuanbing Tang
Faculty Publications

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Exposure Characterization of Haloacetic Acids in Humans for Exposure and Risk Assessment Applications: An Exploratory Study, Shahid Parvez, Jeffrey L. Ashby, Susana Y. Kimura, Susan D. Richardson
Faculty Publications

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2018

Metallo-Polyelectrolytes as a Class of Ionic Macromolecules for Functional Materials, Tianyu Zhu, Ye Sha, Jing Yan, Parasmani Pageni, Md Anisur Rahman, Yi Yan, Chuanbing Tang
Faculty Publications

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Nickel Exposure Reduces Enterobactin Production in Escherichia coli, Clorissa L. Washington-Hughes, Geoffrey T. Ford, Alsten D. Jones, Kimberly McRae, Franklin Wayne Outten
Faculty Publications

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Facially Amphiphilic Polyionene Biocidal Polymers Derived From Lithocholic Acid, Mitra S. Ganewatta, Md Anisur Rahman, Louis Mercado, Tinom Shokfai, Alan W. Decho, Theresa M. Reineke, Chuanbing Tang
Faculty Publications

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Advancing Professional Development Strategies for Chemistry and Biochemistry Undergraduates, Christian A. Brown
Senior Theses

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2017

Investigating the Toxicity and Accumulation of 2,4-Dichlorophenoxyacetic Acid (2,4-D) and Glyphosate in Eisenia fetida, Caitlin Lazurick, Nicole Lidzbarski, Rachel Owings, Jeff Brotherton, Edna Steele
Journal of the South Carolina Academy of Science

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Blockade of CB1 Cannabinoid Receptor Alters Gut Microbiota and Attenuates Inflammation and Diet-Induced Obesity, Pegah Mehrpouya-Bahrami, Kumaraswamy Naidu Chitrala, Mitra S. Ganewatta, Chuanbing Tang, E Angela Murphy, Reilly Enos, Kandy T. Velazquez, Jamie McCellan, Mitzi Nagarkatti, Prakash Nagarkatti
Faculty Publications

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Hydrogen-Bonding-Directed Ordered Assembly of Carboxylated Poly(3-Alkylthiophene)s, David W. Bilger, Jose A. Figueroa, Neil D. Redeker, Amrita Sarkar, Morgan Stefik, Shanjuu Zhang
Faculty Publications

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Epigenetic Regulation of Salicylic Acid-Mediated Plant Defense, Phillip Key
Senior Theses

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Hierarchical Corannulene-Based Materials: Energy Transfer and Solid-State Photophysics, Allison M. Rice, W. Brett Fellows, Ekaterina A. Dolgopolova, Andrew B. Greytak, Aaron K. Vannucci, Mark D. Smith, Stavros G. Karakalos, Jeanette A. Krause, Stanislav M. Avdoshenko, Alexey A. Popov, Natalia B. Shustova Prof. Dr.
Faculty Publications

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2016

Fulleretic Well-Defined Scaffolds: Donor–Fullerene Alignment Through Metal Coordination and Its Effect on Photophysics, Derek E. Williams, Ekaterina A. Dolgopolova, Danielle C. Godfrey, Evgeniya D. Ermolaeva, Perry J. Pellechia Dr., Andrew B. Greytak Prof. Dr., Mark Smith Dr., Stanislav M. Avdoshenko, Dr., Alexey A. Popov Dr., Natalia B. Shustova Prof. Dr.
Faculty Publications

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Measuring the Impact: An Evaluation of Communities in Harmony, Michael Carl Owens
Senior Theses

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Investigating The Function Of Aintegumenta-Like6 (AIL6) In Arabidopsis Flower Development, Han Han
Theses and Dissertations

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2015

Reactive Oxygen Species-Mediated Neurodegeneration is Independent of the Ryanodine Receptor in Caenorhabditis elegans, Lyndsay E.A. Young, Daniel C. Williams
Journal of the South Carolina Academy of Science

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Precise Repair of mPing Excision Sites is Facilitated by Target Site Duplication Derived Microhomology, David M. Gilbert, M. Catherine Bridges, Ashley E. Strother, Courtney E. Burckhalter, James M. Burnette III, C. Nathan Hancock
Faculty Publications

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Modeling of Experimental Atherosclerotic Plaque Delamination, X. Leng, X. Chen, X. Deng, M. A. Sutton, Susan M. Lessner
Faculty Publications

Characterization of the SufC ATPase during Fe-S Cluster Assembly by the Suf Pathway in Escherichia coli, Khaleh Mykel Thomas
Theses and Dissertations

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2014

Imaging the Invisible Instillation View 1, Allison Marsh
Installation

EFFECTS OF INDIVIDUAL PHENOTYPIC VARIATION ON PREDATOR-PREY RELATIONSHIPS OF XANTHID CRABS IN NORTH INLET ESTUARY, SOUTH CAROLINA, Benjamin J. Toscano
Theses and Dissertations

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Cellularized Microcarriers As Adhesive Building Blocks For Fabrication Of Tubular Tissue Constructs, W. O. Twal, S. C. Klatt, K. Harikrishnan, E. Gerges, M. A. Cooley, T. C. Trusk, B. Zhou, M. G. Gabr, T. Shazly, Susan M. Lessner, R. Markwald, W. S. Argraves
Faculty Publications

A Comparison of Angiography Versus Intravascular Ultrasound In The Treatment Of Peripheral Arterial Disease, Michael Pompliano
Senior Theses

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Facile Co-Assembly Process to Generate Core-Shell Nanoparticles with Functional Protein Corona, Nisaraporn Suthiwangcharoen, Tao Li, Laying Wu, Heidi B. Reno, Preston Thompson, Qian Wang
Faculty Publications

Genetic Stock Identification and Migration in Black Sea Bass (Centropristis striata) along the Western Atlantic Coast and Gulf of Mexico, Justin Francis Lewandowski
Theses and Dissertations

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The Effects of SNMP-2 Gene Expression on Mating Discrimination in Male Drosophila Melanogaster, Kristen Taylor Ashourian
Theses and Dissertations

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Population Analysis and Protein Stability Assays Illustrate Xenobiotic Metabolizing Enzymes Have No Detectable Effect on Breast Cancer Development and Progression, Thomas Daniel Crowder
Theses and Dissertations

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Methanol and Ethanol Modulate Responses to Danger- and Microbe- Associated Molecular Patterns in Tomato, Tobacco and Arabidopsis, Claire Teresa Hann
Theses and Dissertations

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Biosignatures in Chimney Structures and Sediment from the Loki’s Castle Low-Temperature Hydrothermal Vent Field at the Arctic Mid-Ocean Ridge, A. Jaeschke, B. Eickmann, Susan Q. Lang, S. M. Bernasconi, H. Strauss, G. L. Früh-Green
Faculty Publications

Mitochondrial Replication from Embryogenesis to Early Adulthood, in DUI Species, Mytilus Galloprovincialis, Ellen Blenn Richardson
Theses and Dissertations

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2013

Quantitative Measurement of Dissection Resistance in Intimal and Medial Layers of Human Coronary Arteries, Y. Wang, J. A. Johnson, F. G. Spinale, M. A. Sutton, Susan M. Lessner
Faculty Publications

The Effects of Salinity, pH, Temperature, and Dissolved Oxygen on Sensitivity of PCR Identification of T4 Bacteriophage, Joesph F. Cannon, Nicholas A. Thurn, Paul E. Richardson
Journal of the South Carolina Academy of Science

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Facile Method for Large Scale Alignment of One Dimensional Nanoparticles and Control over Myoblast Orientation and Differentiation, Xingjie Zan, Sheng Feng, Elizabeth Balizan, Yuan Lin, Qian Wang
Faculty Publications

The Succinated Proteome, Eric D. Merkley, Thomas O. Metz, Richard D. Smith, John W. Baynes, Norma Frizzell
Faculty Publications

Mechanistic Insights from the binding of Substrate and Carbocation Intermediate Analogues to, Mengbin Chen, Naeemah Al-lami, Marine Janvier, Edward L. D'Antonio, Juan A. Faraldos, David E. Cane, Rudolf K. Allemann, David W. Christianson
Faculty Publications

Iron Sensing and Regulation in Saccharomyces cerevisiae: Ironing Out the Mechanistic Details, Caryn E. Outten, Angela-Nadia Albetel
Faculty Publications

A Supramolecular Strategy to Assemble Multifunctional Viral Nanoparticles, Limin Chen, Xia Zhao, Yuan Lin, Yubin Huang, Qian Wang
Faculty Publications

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Crystal Structure of Arginase from Leishmania mexicana and Implications for the Inhibition of Polyamine Biosynthesis in Parasitic Infections, Edward L. D'Antonio, Buddy Ullman, Sigrid C. Roberts, Upasna Gaur Dixit, Mary E. Wilson, Yang Hai, David W. Christianson
Faculty Publications

Chelation Therapy: Overlooked in the Treatment and Prevention of Diabetes Complications?, Norma Frizzell, John W. Baynes
Faculty Publications

Biomolecular Assembly of Thermoresponsive Superlattices of the Tobacco Mosaic Virus with Large Tunable Interparticle Distances, Tao Li, Xingjie Zan, Randall E. Winans, Qian Wang, Byeongdu Lee
Faculty Publications

Chelation Therapy for the Management of Diabetic Complications: A Hypothesis and a Proposal for Clinical Laboratory Assessment of Metal Ion Homeostasis in Plasma, Norma Frizzell, John W. Baynes
Faculty Publications

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Phytoremediation of Bauxite-derived Red Mud by Giant Reed, T. Alshaal, Éva Domokos-Szabolcsy, Laszlo Márton, Mihaly Czakó, J. Kátai, P. Balogh, N. Elhawat, H. El-Ramady, M. Fári
Faculty Publications

Expansion of Breast Cancer Stem Cells with Fibrous Scaffolds, Sheng Feng, Pang-Kuo Lo, Shou Liu, Xinfeng Liu, Hexin Chen, Qian Wang
Faculty Publications

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A Molecular Framework for Auxin-Mediated Initiation of Flower Primordia, Nobutoshi Yamaguchi, Miin-Feng Wu, Cara M. Winter, Markus Christian Berns, Staci Nole-Wilson, Ayako Yamaguchi, George Coupland, Beth A. Krizek, Doris Wagner
Faculty Publications

Energetically Unfavorable Amide Conformations for N6-acetyllysine Side Chains in Refined Protein Structures, Alexander Genshaft, Joe-Ann S. Moser, Edward L. D'Antonio, Christine M. Bowman, David W. Christianson
Faculty Publications

An Acid Catalyzed Reversible Ring-Opening/Ring-Closure Reaction Involving a Cyano-Rhodamine Spirolactam, H. Li, H. Guan, X. Duan, J. Hu, Guiren Wang, Qian Wang
Faculty Publications

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Executing and Teaching Science--the Breast Cancer Genetics and Technology-Rich Curriculum Professional Development Studies of a Science Educator, Regina Evarn Wragg
Theses and Dissertations

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Tnt1 Retrotransposon Mutagenesis: A Tool for Soybean Functional Genomics, Yaya Cui, Shyam Barampuram, Minviluz G. Stacey, C. Nathan Hancock, Seth Findley, Melanie Mathieu, Zhanyuan Zhang, Wayne A. Parrott, Gary Stacey
Faculty Publications

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Voltammetry of Dehaloperoxidase on Self-Assembled Monolayers: Reversible Adsorptive Immobilization of a Globin, Edward L. D'Antonio, Thomas K. Chen, Abigail H. Turner, Lisandra Santiago-Capeles, Edmond F. Bowden
Faculty Publications

2012

Porous Alginate Hydrogel Functionalized with Virus as Three-Dimensional Scaffolds for Bone Differentiation, Jittima Luckanagul, L. Andrew Lee, Quyen L. Nguyen, Pongkwan Sitasuwan, Xioming Yang, Tarek M. Shazly, Qian Wang
Faculty Publications

Complex of Myoglobin with Phenol Bound in a Proximal Cavity, Xiao Huang, Chunxue Wang, Lesa R. Celeste, Leslie L. Lovelace, Shengfang Sun, John H. Dawson, Lukasz Lebioda
Faculty Publications

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Structure and Function of Non-Native Metal Clusters in Human Arginase I, Edward L. D'Antonio, Yang Hai, David W. Christianson
Faculty Publications

In Vivo Virus-Based Macrofluorogenic Probes Target Azide-Labeled Surface Glycans in MCF-7 Breast Cancer Cells, Clorissa L. Washington-Hughes, Yixing Cheng, Xinrui Duan, Li Cai, L. Andrew Lee, Qian Wang
Faculty Publications

Breast Tumour Initiating Cell Fate Is Regulated by Microenvironmental Cues from an Extracellular Matrix, Sharmistha Saha, Pang-Kuo Lo, Xinrui Duan, Hexin Chen, Qian Wang
Faculty Publications

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Discrimination of Colon Cancer Stem Cells Using Noncanonical Amino Acid, Xinrui Duan, Honglin Li, Hexin Chen, Qian Wang
Faculty Publications

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Redox Properties of the Disulfide Bond of Human Cu,Zn Superoxide Dismutase and the Effects of Human Glutaredoxin 1, Samantha Diane Bouldin, Maxwell A. Darch, P. John Hart, Caryn E. Outten
Faculty Publications

Accumulation of Red Elemental Selenium Nanoparticles and their Biological Effects in Nicotiana Tabacum, Éva Domokos-Szabolcsy, Laszlo Márton, Attila Sztrik, Beata Babka, Jozsef Prokisch, Miklos Fari
Faculty Publications

Mitochondrial Stress Causes Increased Succination of Proteins in Adipocytes in Response to Glucotoxicity, Norma Frizzell, Sonia A. Thomas, James A. Carson, John W. Baynes
Faculty Publications

Monothiol CGFS Glutaredoxins and BolA-Like Proteins: [2Fe-2S] Binding Partners in Iron Homeostasis, Haoran Li, Caryn E. Outten
Faculty Publications

Redox-Sensitive YFP Sensors Monitor Dynamic Nuclear and Cytosolic Glutathione Redox Changes, Michèle Dardalhon, Chitranshu Kumar, Ismail Iraqui, Laurence Vernis, Guy Kienda, Agata Banach-Latapy, Tiantian He, Roland Chanet, Gérard Faye, Caryn E. Outten, Meng-Er Huang
Faculty Publications

A Plant Virus Substrate Induces Early Upregulation of BMP2 for Rapid Bone Formation, Pongkwan Sitasuwan, L. Andrew Lee, Peng Bo, Erin N. Davis, Yuan Lin, Qian Wang
Faculty Publications

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Thin-layer Spectroelectrochemistry of the Fe(III)/Fe(II) Redox Reaction of Dehaloperoxidase-hemoglobin, Edward L. D'Antonio, Edmond F. Bowden, Stefan Franzen
Faculty Publications

Human Glutaredoxin 3 Forms [2Fe-2S]-Bridged Complexes with Human BolA2, Haoran Li, Daphne T. Mapolelo, Sajini Randeniya, Michael K. Johnson, Caryn E. Outten
Faculty Publications

Structures of Asymmetric Complexes of Human Neuron Specific Enolase with Resolved Substrate and Product and an Analogous Complex with Two Inhibitors Indicate Subunit Interaction and Inhibitor Cooperativity, Jie Qin, Geqing Chai, John M. Brewer, Leslie L. Lovelace, Lukasz Lebioda
Faculty Publications

Spotlight on USC: A.C. Moore Herbarium, Allison Marsh
Section 2: Imaging the Microscopic

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Imaging the Invisible Instillation View 5, Allison Marsh
Installation

Imaging the Invisible Instillation View 6, Allison Marsh
Installation

Imaging the Invisible Instillation View 7, Allison Marsh
Installation

Imaging the Invisible Instillation View 8, Allison Marsh
Installation

Imaging the Invisible Instillation View 4, Allison Marsh
Installation

Imaging the Invisible Instillation View 3, Allison Marsh
Installation

Imaging the Invisible Instillation View 2, Allison Marsh
Installation

Imaging and Aesthetics, Allison Marsh
Section 2: Imaging the Microscopic

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Why do We Collect?, Allison Marsh
Section 2: Imaging the Microscopic

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Binding of the Unreactive Substrate Analog L-2-amino-3-guanidinopropionic Acid (dinor-L-arginine) to Human Arginase I, Edward L. D'Antonio, David W. Christianson
Faculty Publications

Conclusion Panel, Allison Marsh
Section 6: Conclusion

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The Mechanical Properties of Epoxy Composites Filled with Rubbery Copolymer Grafted SiO2, Jianing Gao, Junting Li, Brian C. Benicewicz, Su Zhao, Henrik Hillborg, Linda S. Schadler
Faculty Publications

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2011

Electrospun Fibrous Scaffolds Promote Breast Cancer Cell Alignment and Epithelial–Mesenchymal Transition, Sharmistha Saha, Xinrui Duan, Laying Wu, Pang-Kuo Lo, Hexin Chen, Qian Wang
Faculty Publications

Mutant Plant Viruses with Cell Binding Motifs Provide Differential Adhesion Strengths and Morphologies, L. Andrew Lee, Quyen L. Nguyen, Laying Wu, Gary C. Horvath, Richard S. Nelson, Qian Wang
Faculty Publications

AINTEGUMENTA-LIKE6 Regulates Cellular Differentiation in Flowers, Beth A. Krizek, Marcie Eaddy
Faculty Publications

Mechanism of N10-Formyltetrahydrofolate Synthetase Derived from Complexes with Intermediates and Inhibitors, Lesa R. Celeste, Geqing Chai, Magdalena Bielak, Wladek Minor, Leslie L. Lovelace, Lukasz Lebioda
Faculty Publications

The Rice Miniature Inverted Repeat Transposable Element mPing Is an Effective Insertional Mutagen in Soybean, C. Nathan Hancock, Feng Zhang, Kristen Floyd, Aaron O. Richardson, Peter LaFayette, Donna Tucker, Susan R. Wessler, Wayne A. Parrott
Faculty Publications

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Gut Barrier Dysfunction in the ApcMin/+ Mouse Model of Colon Cancer Cachexia, Melissa J. Puppa, James P. White, Shuichi Sato, Mark Cairns, John W. Baynes, James A. Carson
Faculty Publications

Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin, Edward L. D'Antonio, Jennifer D'Antonio, Vesna de Serrano, Hanna Gracz, Matthew K. Thompson, Reza A. Ghiladi, Edmond F. Bowden, Stefan Franzen
Faculty Publications

Crystal Structures of Complexes with Cobalt-Reconstituted Human Arginase I, Edward L. D'Antonio, David W. Christianson
Faculty Publications

Amphitrite ornata Dehaloperoxidase (DHP): Investigations of Structural Factors That Influence the Mechanism of Halophenol Dehalogenation Using “Peroxidase-like” Myoglobin Mutants and “Myoglobin-like” DHP Mutants, Jing Du, Xiao Huang, Shengfang Sun, Chunxue Wang, Lukasz Lebioda, John H. Dawson
Faculty Publications

Visualizing Cell Extracellular Matrix (ECM) Deposited by Cells Cultured on Aligned Bacteriophage M13 Thin Films, Laying Wu, L. Andrew Lee, Zhongwei Niu, Soumitra Ghoshroy, Qian Wang
Faculty Publications

Structural Analysis of a Putative Aminoglycoside N-Acetyltransferase from Bacillus anthracis, Maria M. Klimecka, Maksymilian Chruszcz, Jose Font, Tatiana Skarina, Igor Shumilin, Olena Onopryienko, Przemyslaw J. Porebski, Marcin Cymborowski, Matthew D. Zimmerman, Jeremy Hasseman, Ian Justin Glomski, Lukasz Lebioda, Alexei Savchenko, Aled Edwards, Wladek Minor
Faculty Publications

Structure of Human C8 Protein Provides Mechanistic Insight into Membrane Pore Formation by Complement, Leslie L. Lovelace, Christopher L. Cooper, James M. Sodetz, Lukasz Lebioda
Faculty Publications

Forging Ahead: New Mechanistic Insights into Iron Biochemistry, Perry A. Frey, Caryn E. Outten
Faculty Publications

Evolution of Metamorphism in Thymidylate Synthases Within the Primate Lineages, BeiBei Luo, Saphronia R. Johnson, Lukasz Lebioda, Sondra H. Berger
Faculty Publications

Cascade and Staggered Dielectrophoretic Cell Sorters, F. Yang, Xiaoming Yang, H. Jiang, Guiren Wang
Faculty Publications

THE ROLE OF THE RNA-BINDING PROTEIN TRISTETRAPROLIN IN CERVICAL AND COLORECTAL CANCERS, Sandhya Sanduja
Theses and Dissertations

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Histidine 103 in Fra2 Is an Iron-Sulfur Cluster Ligand in the [2Fe-2S] Fra2-Grx3 Complex and Is Required for in Vivo Iron Signaling in Yeast, Haoran Li, Daphne T. Mapolelo, Nin N. Dingra, Greg Keller, Pamela J. Riggs-Gelasco, Dennis R. Winge, Michael K. Johnson, Caryn E. Outten
Faculty Publications

Loose Ligands and Available Iron in the Ocean, Ronald Benner
Faculty Publications

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2010

Chemoselective Modification of Turnip Yellow Mosaic Virus by Cu(I) Catalyzed Azide-Alkyne 1,3-Dipolar Cycloaddition Reaction and Its Application in Cell Binding, Qingbing Zeng, Sharmistha Saha, L. Andrew Lee, Hannah Barnhill, Jerry Oxsher, Theo Dreher, Qian Wang
Faculty Publications

Human Thymidylate Synthase with Loop 181–197 Stabilized in an Inactive Conformation: Ligand Interactions, Phosphorylation, and Inhibition Profiles, Beibei Luo, Jayanthi Repalli, Al‐Motassem Yousef, Saphronia R. Johnson, Lukasz Lebioda, Sondra H. Berger
Faculty Publications

Systematic Approach to Electrostatically Induced 2D Crystallization of Nanoparticles at Liquid Interfaces, Sumit Kewalramani, Suntao Wang, Yuan Lin, Huong Giang Nguyen, Qian Wang, Masafumi Fukuto, Lin Yang
Faculty Publications

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A Nanoparticle Size Series for In Vivo Fluorescence Imaging, Zoran Popović, Wenhao Liu, Vikash Chauhan, Jungmin Lee, Cliff Wong, Andrew B. Greytak, Numpon Insin, Daniel G. Nocera, Dai Fukumura, Rakesh Jain, Moungi G. Bawendi
Faculty Publications

Controlled Assembly of Protein in Glass Capillary, Yuan Lin, Zhaohui Su, Elizabeth Balizan, Zhongwei Niu, Qian Wang
Faculty Publications

Spectroscopic and Mechanistic Investigations of Dehaloperoxidase B from Amphitrite ornata, Jennifer D'Antonio, Edward L. D'Antonio, Matthew K. Thompson, Edmond F. Bowden, Stefan Franzen, Tatyana Smirnova, Reza A. Ghiladi
Faculty Publications

Chemical Modification of M13 Bacteriophage and Its Application in Cancer Cell Imaging, Kai Li, Yi Chen, Siqi Li, Huong Giang Nguyen, Zhongwei Niu, Shaojin You, Charlene M. Mello, Xiaobing Lu, Qian Wang
Faculty Publications

Biological and Photochemical Transformations of Lignin Phenols and Amino Acids in Riverine Dissolved Organic Matter, Ronald Benner, Karl Kaiser
Faculty Publications

Citric Acid Inhibits Development of Cataracts, Proteinuria and Ketosis in Streptozotocin (Type 1) Diabetic Rats, Ryoji Nagai, Mime Nagai, Satoko Shimasaki, John W. Baynes, Yukio Fujiwara
Faculty Publications

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability, Xiao Huang, Lydia M. Gibson, Brittnaie J. Bell, Leslie L. Lovelace, Maria M. Peña, Franklin G. Berger, Sondra H. Berger, Lukasz Lebioda
Faculty Publications

Transposition of the Tourist-MITE mPing in Yeast: An Assay that Retains Key Features of Catalysis by the Class 2 PIF/Harbinger Superfamily, C. Nathan Hancock, Feng Zhang, Susan R. Wessler
Faculty Publications

2009

Compact Biocompatible Quantum Dots via RAFT-Mediated Synthesis of Imidazole-Based Copolymer Ligand, Wenhao Liu, Andrew B. Greytak, Jungmin Lee, Cliff R. Wong, Jongnam Park, Lisa F. Marshall, Wen Jiang, Peter N. Curtin, Alice Y. Ting, Daniel G. Nocera, Dai Fukumura, Rakesh K. Jain, Moungi G. Bawendi
Faculty Publications

Mice Deficient in Both Mn Superoxide Dismutase and Glutathione Peroxidase-1 Have Increased Oxidative Damage and a Greater Incidence of Pathology but No Reduction in Longevity, Yiqiang Zhang, Yuji Ikeno, Wenbo Qi, Asish Chaudhuri, Yan Li, Alex Bokov, Suzanne R. Thorpe, John W. Baynes, Charles Epstein, Arlan Richardson, Holly Van Remmen
Faculty Publications

Two-Photon Absorbing Nanocrystal Sensors for Ratiometric Detection of Oxygen, Emily J. McLaurin, Andrew B. Greytak, Moungi G. Bawendi, Daniel G. Nocera
Faculty Publications

The Yeast Iron Regulatory Proteins Grx3/4 and Fra2 Form Heterodimeric Complexes Containing a [2Fe-2S] Cluster with Cysteinyl and Histidyl Ligation, Haoran Li, Daphne T. Mapolelo, Nin N. Dingra, Sunil G. Naik, Nicholas S. Lees, Brian M. Hoffman, Pamela J. Riggs-Gelasco, Boi Hanh Huynh, Michael K. Johnson, Caryn E. Outten
Faculty Publications

Glycation of Wood Frog (Rana sylvatica) Hemoglobin and Blood Proteins: In vivo and in vitro Studies, Justin A. MacDonald, Thorsten Degenhardt, John W. Baynes, Kenneth B. Storey
Faculty Publications

Activation of Cu,Zn-Superoxide Dismutase in the Absence of Oxygen and the Copper Chaperone CCS, Jeffry M. Leitch, Laran T. Jensen, Samantha Diane Bouldin, Caryn E. Outten, P. John Hart, Valeria C. Culotta
Faculty Publications

Organic Matter Diagenesis and Bacterial Contributions to Detrital Carbon and Nitrogen in the Amazon River System, Luc Tremblay, Ronald Benner
Faculty Publications

Variants of Human Thymidylate Synthase with Loop 181–197 Stabilized in the Inactive Conformation, Leslie L. Lovelace, Saphronia R. Johnson, Lydia M. Gibson, Brittnaie J. Bell, Sondra H. Berger, Lukasz Lebioda
Faculty Publications

Will The Real Plaque Vasculature Please Stand Up? Why We Need To Distinguish The Vasa Plaquorum From The Vasa Vasorum, Z. S. Galis, Susan M. Lessner
Faculty Publications

Interfacial Assembly of Turnip Yellow Mosaic Virus Nanoparticles, Gagandeep Kaur, Jinbo He, Ji Xu, SaiVenkatesh Pingali, Günther Jutz, Alexander Böker, Zhongwei Niu, Tao Li, Dustin Rawlinson, Todd Emrick, Byeongdu Lee, Pappannan Thiyagarajan, Thomas P. Russell, Qian Wang
Faculty Publications

Cellular Uptake and Cytotoxicity of Gold Nanorods: Molecular Origin of Cytotoxicity and Surface Effects, Alaaldin M. Alkilany, Pratik K. Nagaria, Cole R. Hexel, Timothy J. Shaw, Catherine J. Murphy, Michael D. Wyatt
Faculty Publications

Closed-Packed Colloidal Assemblies from Icosahedral Plant Virus and Polymer, Tao Li, Bei Ye, Zhongwei Niu, Preston Thompson, Soenke Seifert, Byeongdu Lee, Qian Wang
Faculty Publications

Limb Bud Mesenchyme Cultured under Tensile Strain Remodel Collagen Type I Tubes to Produce Fibrillar Collagen Type II, J. R. Amos, Shigeng Li, Michael J. Yost, Harry J. Ploehn, Jay D. Potts
Faculty Publications

The Metal Chelators, Trientine and Citrate, Inhibit the Development of Cardiac Pathology in the Zucker Diabetic Rat, John W. Baynes, David B. Murray
Faculty Publications

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Biochemical Indicators for the Bioavailability of Organic Carbon in Ground Water, Francis H. Chapelle, Paul M. Bradley, Dan J. Goode, Claire Tiedeman, Pierre J. Lacombe, Karl Kaiser, Ronald Benner
Faculty Publications

2008

Development of Boronic Acid Grafted Random Copolymer Sensing Fluid for Continuous Glucose Monitoring, Siqi Li, Erin N. Davis, Jordan Anderson, Qiao Lin, Qian Wang
Faculty Publications

Amino Acid and Amino Sugar Yields and Compositions as Indicators of Dissolved Organic Matter Diagenesis, Jenny Davis, Karl Kaiser, Ronald Benner
Faculty Publications

Biochemical Composition and Size Distribution of Organic Matter at the Pacific and Atlantic Time-Series Stations, Karl Kaiser, Ronald Benner
Faculty Publications

Core/Shell Biocomposites from the Hierarchical Assembly of Bionanoparticles and Polymer, Tao Li, Zhongwei Niu, Todd Emrick, Thomas P. Russell, Qian Wang
Faculty Publications

The Redox Environment in the Mitochondrial Intermembrane Space Is Maintained Separately from the Cytosol and Matrix, Jingjing Hu, Lixue Dong, Caryn E. Outten
Faculty Publications

Oriented Cell Growth on Self-Assembled Bacteriophage M13 Thin Films, Jianhua Rong, L. Andrew Lee, Kai Li, Brandon Harp, Charlene M. Mello, Zhongwei Niu, Qian Wang
Faculty Publications

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Dispersion and Cycling of Organic Matter from Sepik River Outflow to the Papua New Guinea Coast as Determined from Biomarkers, Kathryn A. Burns, Peter J. Hernes, Diane Brinkman, Anita Poulsen, Ronald Benner
Faculty Publications

Data Mining of Metal Ion Environments Present in Protein Structures, Heping Zhenga, Maksymilian Chruszcz, Piotr Lasota, Lukasz Lebioda, Wladek Minor
Faculty Publications

Crystal Structure of the MACPF Domain of Human Complement Protein C8α in Complex with the C8γ Subunit, Daniel J. Slade, Leslie L. Lovelace, Maksymilian Chruszcz, Wladek Minor, Lukasz Lebioda, James M. Sodetz
Faculty Publications

Identification of FRA1 and FRA2 as Genes Involved in Regulating the Yeast Iron Regulon in Response to Decreased Mitochondrial Iron-Sulfur Cluster Synthesis, Attila Kumánovics, Opal S. Chen, Liangtao Li, Dustin Bagley, Erika M. Adkins, Huilan Lin, Nin Nin Dingra, Caryn E. Outten, Greg Keller, Dennis Winge, Diane M. Ward, Jerry Kaplan
Faculty Publications

Marine Bioplolymer Self-Assembly: Implications for Carbon Cycling in the Ocean, Pedro Verdugo, Monica V. Orellana, Wei-Chun Chin, Timothy W. Petersen, Ger van den Eng, Ronald Benner, John I. Hedges
Faculty Publications

The R163K Mutant of Human Thymidylate Synthase Is Stabilized in an Active Conformation: Structural Asymmetry and Reactivity of Cysteine 195, Lydia M. Gibson, Leslie L. Lovelace, Lukasz Lebioda
Faculty Publications

Novel Role of Antioxidant-1 (Atox1) as a Copper-Dependent Transcription Factor Involved in Cell Proliferation, S. Itoh, H. W. Kim, O. Nakagawa, K. Ozumi, Susan M. Lessner, H. Aoki, K. Akram, R. D. McKinney, M. Ushio-Fukai, T. Fukai
Faculty Publications

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Compact Biocompatible Quantum Dots Functionalized for Cellular Imaging, Wenhao Liu, Mark Howarth, Andrew B. Greytak, Yi Zheng, Daniel G. Nocera, Alice Y. Ting, Moungi G. Bawendi
Faculty Publications

Major Bacterial Contribution to the Ocean Reservoir of Detrital Organic Carbon and Nitrogen, Karl Kaiser, Ronald Benner
Faculty Publications

2007

Quantitative Estimates of Labile and Semi-Labile Dissolved Organic Carbon in the Western Arctic Ocean: A Molecular Approach, Jenny Davis, Ronald Benner
Faculty Publications

Succination of Protein Thiols During Adipocyte Maturation: A Biomarker of Mitochondrial Stress, Ryoji Nagai, Johathan W. Brock, Matthew Blatnik, John E. Baatz, Jennifer Bethard, Michael D. Walla, Suzanne R. Thorpe, John W. Baynes, Norma Frizzell
Faculty Publications

1,3,7,10,14,17,21,28,31,42,52,55-Dodeca­kis(trifluoro­meth­yl)- 1,3,7,10,14,17,21,28,31,42,52,55-dodeca­hydro­(C60-Ih)[5,6]fullerene, Natalia B. Shustova Prof. Dr., O.P. Anderson, O. V. Boltalina, S. H. Strauss, I. E. Kareev
Faculty Publications

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Amino Acid Nitrogen Isotopic Fractionation Patterns as Indicators of Heterotrophy in Plankton, Particulate, and Dissolved Organic Matter, Matthew D. McCarthy, Ronald Benner, Cindy Lee, Marilyn L. Fogel
Faculty Publications

Crystal Structure of Complement Protein C8γ in Complex with a Peptide Containing the C8γ Binding Site on C8α: Implications for C8γ Ligand Binding, Leslie L. Lovelace, Brian Chiswell, Daniel J. Slade, James M. Sodetz, Lukasz Lebioda
Faculty Publications

Structural Features of the Ligand Binding Site on Human Complement Protein C8γ: A Member of the Lipocalin Family, Brian Chiswell, Leslie L. Lovelace, Charity Brannen, Eric A. Ortlund, Lukasz Lebioda, James M. Sodetz
Faculty Publications

The EAR-motif of the Cys2/His2-Type Zinc Finger Protein Zat7 Plays a Key Role in the Defense Response of Arabidopsis to Salinity Stress, Sultan Ciftci-Yilmaz, Mustafa R. Morsy, Luhua Song, Alicia Coutu, Beth A. Krizek, Michael W. Lewis, Daniel Warren, John Cushman, Erin L. Connolly, Ron Mittler
Faculty Publications

Cooperative Inhibition of Human Thymidylate Synthase by Mixtures of Active Site Binding and Allosteric Inhibitors, Leslie L. Lovelace, Lydia M. Gibson, Lukasz Lebioda
Faculty Publications

2006

Formation of Methionine Sulfoxide During Glycoxidation and Lipoxidation of Ribonuclease A, Jonathan W. C. Brock, Jennifer M. Ames, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

Nature and Dynamics of Phosphorus-Containing Components of Marine Dissolved and Particulate Organic Matter, Poulomi Sannigrahi, Ellery D. Ingall, Ronald Benner
Faculty Publications

Bacterial Release of Dissolved Organic Matter During Cell Growth and Decline: Molecular Origin and Composition, Nobu Kawasaki, Ronald Benner
Faculty Publications

The Effects of Glutaredoxin and Copper Activation Pathways on the Disulfide and Stability of Cu,Zn Superoxide Dismutase, Mark C. Carroll, Caryn E. Outten, Jody B. Proescher, Leah Rosenfeld, Walter H. Watson, Lisa J. Whitson, P. John Hart, Laran T. Jensen, Valeria Cizewski Culotta
Faculty Publications

Chemical Characteristics of Dissolved Organic Nitrogen in an Oligotrophic Subtropical Coastal Ecosystem, Nagamitsu Maie, Kathleen J. Parish, Akira Watanabe, Heike Knicker, Ronald Benner, Tomonori Abe, Karl Kaiser, Rudolf Jaffe
Faculty Publications

Cadmium and Mercury Cause an Oxidative Stress-Induced Endothelial Dysfunction, Matthew B. Wolf, John W. Baynes
Faculty Publications

Characterization of a Major Refractory Component of Marine Dissolved Organic Matter, Norbert Hertkorn, Ronald Benner, Moritz Frommberger, Philippe Schmitt-Kopplin, Matthias Witt, Karl Kaiser, Antonius Kettrup, John I. Hedges
Faculty Publications

S-(2-Succinyl)cysteine: A Novel Chemical Modification of Tissue Proteins by a Krebs Cycle Intermediate, Nathan L. Alderson, Yuping Wang, Matthew Blatnik, Norma Frizzell, Michael D. Walla, Timothy J. Lyons, Nadja Alt, James A. Carson, Ryoji Nagai, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

Structures of Thiolate- and Carboxylate-Ligated Ferric H93G Myoglobin:  Models for Cytochrome P450 and for Oxyanion-Bound Heme Proteins, Jie Qin, Roshan Perera, Leslie L. Lovelace, John H. Dawson, Lukasz Lebioda
Faculty Publications

Terrigenous Organic Matter Sources and Reactivity in the North Atlantic Ocean and a Comparison to the Arctic and Pacific Oceans, Peter J. Hernes, Ronald Benner
Faculty Publications

2005

Fluoride Inhibition of Enolase: Crystal Structure and Thermodynamics, Jie Qin, Geqing Chai, John M. Brewer, Leslie L. Lovelace, Lukasz Lebioda
Faculty Publications

Seasonal Trends in the Abundance, Composition and Bioavailability of Particulate and Dissolved Organic Matter in the Chukchi/Beaufort Seas and Western Canada Basin, Jenny Davis, Ronald Benner
Faculty Publications

The Anti-Cancer Drug, Doxorubicin, Causes Oxidant Stress-Induced Endothelial Dysfunction, Matthew B. Wolf, John W. Baynes
Faculty Publications

Microbial Contributions to N-Immobilization and Organic Matter Preservation in Decaying Plant Detritus, Luc Tremblay, Ronald Benner
Faculty Publications

Molecular Mechanisms of Flower Development: An Armchair Guide, Beth A. Krizek, Jennifer C. Fletcher
Faculty Publications

Hydrolysis-Induced Racemization of Amino Acids, Karl Kaiser, Ronald Benner
Faculty Publications

Cycling of Dissolved and Particulate Organic Matter at Station Aloha: Insights from 13C NMR Spectroscopy Coupled with Elemental, Isotopic and Molecular Analyses, Poulomi Sannigrahi, Ellery D. Ingall, Ronald Benner
Faculty Publications

Terrigenous Dissolved Organic Matter in the Arctic Ocean and Its Transport to Surface and Deep Waters of the North Atlantic, Ronald Benner, Patrick Louchouarn, Rainer M. W. Amon
Faculty Publications

Cellular Factors Required for Protection from Hyperoxia Toxicity in Saccharomyces cerevisiae, Caryn E. Outten, Robert L. Falk, Valeria C. Culotta
Faculty Publications

AINTEGUMENTA-like (AIL) Genes Are Expressed in Young Tissues and May Specify Meristematic or Division-Competent States, Staci Nole-Wilson, Traci L. Tranby, Beth A. Krizek
Faculty Publications

2004

Hydrogen Deficient Molecules in Natural Riverine Water Samples - Evidence for the Existence of Black Carbon in DOM, Sunghwan Kim, Louis A. Kaplan, Ronald Benner, Patrick G. Hatcher
Faculty Publications

Dynamics of Dissolved Organic Carbon, Nitrogen and Phosphorus in a Seagrass Meadow of Laguna Madre, Texas, Susan Ziegler, Edith Kaiser, Ronald Benner
Faculty Publications

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Symposium on New Approaches in Marine Organic Biogeochemistry: A Tribute to the Life and Science of John I. Hedges, Cindy Lee, Stuart G. Wakeham, Ronald Benner
Faculty Publications

What Happens to Terrestrial Organic Matter in the Ocean?, Ronald Benner
Faculty Publications

Organic Biomarkers for Tracing Carbon Cycling in the Gulf of Papua (Papua New Guinea), Kathryn A. Burns, Paul Greenwood, Ronald Benner, Diane L. Brinkman, Greg Brunskill, Susan Codi, Irena Zagorskis
Faculty Publications

Amino Acid Carbon Isotopic Fractionation Patterns in Oceanic Dissolved Organic Matter: An Unaltered Photoautotrophic Source for Dissolved Organic Nitrogen in the Ocean?, Matthew D. McCarthy, Ronald Benner, Cindy Lee, John I. Hedges, Marilyn L. Fogel
Faculty Publications

Nanowire Photonic Circuit Elements, Carl J. Barrelet, Andrew B. Greytak, Charles M. Lieber
Faculty Publications

Effect of Antioxidants and ACE Inhibition on Chemical Modification of Proteins and Progression of Nephropathy in the Streptozotocin Diabetic Rat, N. L. Alderson, M. E. Chachich, Norma Frizzell, P. Canning, Tryston O. Metz, A. S. Januszewski, N. N. Youssef, A. W. Stitt, John W. Baynes, S. R. Thorpe
Faculty Publications

Expression, Purification and the 1.8 Å Resolution Crystal Structure of Human Neuron Specific Enolase, Geqing Chai, John M. Brewer, Leslie L. Lovelace, Takashi Aoki, Wladek Minor, Lukasz Lebioda
Faculty Publications

Growth and Transport Properties of Complementary Germanium Nanowire Field Effect Transistors, Andrew B. Greytak, Lincoln J. Lauhon, Mark S. Gudiksen, Charles M. Lieber
Faculty Publications

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Transformation of Dissolved and Particulate Materials on Continental Shelves Influenced by Large Rivers: Plume Processes, Michael J. Dagg, Ronald Benner, Steven Lohrenz, David Lawrence
Faculty Publications

Export of Young Terrigenous Dissolved Organic Carbon from Rivers to the Arctic Ocean, Ronald Benner, Bryan Benitez-Nelson, Karl Kaiser, Rainer M. W. Amon
Faculty Publications

Alternative Start Sites in the Saccharomyces cerevisiae GLR1 Gene Are Responsible for Mitochondrial and Cytosolic Isoforms of Glutathione Reductase, Caryn E. Outten, V. C. Culotta
Faculty Publications

Editorial for the special Issue of Pharmacology, Biochemistry and Behavior on “Sex and Drugs”, Marlene A. Wilson, Sandra J. Kelly
Faculty Publications

Competition Between Biological and Photochemical Processes in the Mineralization of Dissolved Organic Carbon, Ingrid Obernosterer, Ronald Benner
Faculty Publications

2003

Effects of Ligand Binding and Conformational Switching on Intracellular Stability of Human Thymidylate Synthase, Sondra H. Berger, Franklin G. Berger, Lukasz Lebioda
Faculty Publications

Molecular Basis of Metal-Ion Selectivity and Zeptomolar Sensitivity by CueR, A. Changela, K. Chen, Y. Xue, J. Holschen, Caryn E. Outten, T. V. O'Halloran, A. Mondragón
Faculty Publications

Menadione Causes Endothelial Barrier Failure by a Direct Effect on Intracellular Thiols, Independent of Reactive Oxidant Production, William C. McAmis, Richard C. Schaeffer Jr., John W. Baynes, Matthew B. Wolf
Faculty Publications

A Novel NADH Kinase Is the Mitochondrial Source of NADPH in Saccharomyces cerevisiae, Caryn E. Outten, V. C. Culotta
Faculty Publications

AGE-breakers Cleave Model Compounds, But Do Not Break Maillard Crosslinks in Skin and Tail Collagen from Diabetic Rats, Shengzu Yang, John E. Litchfield, John W. Baynes
Faculty Publications

2001

Chelating Activity of Advanced Glycation End-product Inhibitors, David L. Price, Patricia M. Rhett, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

Characterization and Origin of Dissolved Organic Carbon in Yegua Ground Water in Brazos County, Texas, Joyanto Routh, Ethan L. Grossman, Ellyn M. Murphy, Ronald Benner
Faculty Publications

Tannin Diagenesis in Mangrove Leaves from a Tropical Estuary: A Novel Molecular Approach, Peter J. Hernes, Ronald Benner, Gregory L. Cowie, Miguel A. Goñi, Brian A. Bergamaschi
Faculty Publications

Shape Imprinting Due to Variable Disulfide Bonds in Polyacrylamide Gels, Andrew B. Greytak, Alexander Y. Grosberg, Toyoichi Tanaka
Faculty Publications

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Femtomolar Sensitivity of Metalloregulatory Proteins Controlling Zinc Homeostasis, Caryn E. Outten, T. V. O'Halloran
Faculty Publications

Linkages Among the Bioreactivity, Chemical Composition, and Diagenetic State of Marine Dissolved Organic Matter, Amon M. W. Rainer, Hans-Peter Fitznar, Ronald Benner
Faculty Publications

Composition and Cycling of Marine Organic Phosphorus, Lauren Clark Kolowith, Ellery D. Ingall, Ronald Benner
Faculty Publications

Molecular Indicators of the Sources and Transformations of Dissolved Organic Matter in the Mississippi River Plume, Ronald Benner, Stephen Opsahl
Faculty Publications

Characterization of the Metal Receptor Sites in Escherichia coli Zur, and Ultrasensitive Zinc(II) Metalloregulatory Protein, Caryn E. Outten, D. A. Tobin, J. E. Penner-Hahn, T. V. O'Halloran
Faculty Publications

Extreme Zinc-Binding Thermodynamics of the Metal Sensor/Regulator Protein, ZntR, Y. Hitomi, Caryn E. Outten, T. V. O'Halloran
Faculty Publications

2000

Organic Matter in Bolivian Tributaries of the Amazon River: A Comparison to the Lower Mainstream, John I. Hedges, Emilio Mayorga, Elizabeth Tsamakis, Michael E. McClain, Anthony Aufdenkampe, Paul Quay, Jeffrey E. Richey, Ronald Benner, Steve Opsahl, Brenda Black, Tania Pimentel, Jorge Quintanilla, Laurence Maurice
Faculty Publications

Transcriptional Activation of an Escherichia coli Copper Efflux Regulon by the Chromosomal MerR Homologue, CueR, F. Wayne Outten, Caryn E. Outten, J. Hale, T. V. O'Halloran
Faculty Publications

Age-Related Accumulation of Maillard Reaction Products in Human Articular Cartilage Collagen, Nicole Verzijl, Jeroen DeGroot, Esther Oldehinkel, Ruud A. Bank, Suzanne R. Thorpe, John W. Baynes, Michael T. Bayliss, Johannes W.J. Bijlsma, Floris P.J.G. Lafeber, Johan M. TeKoppele
Faculty Publications

Effects of Solar Radiation on Dissolved Organic Matter Cycling in a Subtropical Seagrass Meadow, Susan Ziegler, Ronald Benner
Faculty Publications

Microbial Metabolism and Nutrient Cycling in the Mississippi and Atchafalaya River Plumes, Joseph Dean Pakulski, Ronald Benner, Terry E. Whitledge, Rainer M. W. Amon, Brian J. Eadie, Luis A. Cifuentes, James W. Ammerman, Dean A. Stockwell
Faculty Publications

1999

Major Flux of Terrigenous Dissolved Organic Matter Through the Arctic Ocean, Stephen Opsahl, Ronald Benner, Ranier M. W. Amon
Faculty Publications

DNA Distortion Mechanism for Transcriptional Activation by ZntR, a Zn(II)-responsive MerR Homologue in Escherichia coli, Caryn E. Outten, F. Wayne Outten, T. V. O'Halloran
Faculty Publications

Bacterial Utilization of Dissolved Glucose in the Upper Water Column of the Gulf of Mexico, Annelie Skoog, Bopaiah Biddanda, Ronald Benner
Faculty Publications

The Reaction of Hyaluronic Acid and Its Monomers, Glucuronic Acid and N-acetylglucosamine, with Reactive Oxygen Species, Michael Jahn, John W. Baynes, Gerhard Spiteller
Faculty Publications

High-Resolution Measurements of Dissolved Organic Carbon in the Arctic Ocean by In-Situ Fiber-Optic Spectrometry, Christopher K. Guay, Gary P. Klinkhammer, Kelly Kenison Falkner, Ronald Benner, Paula G. Coble, Terry E. Whitledge, Brenda Black, F. Joseph Bussell, Tim A. Wagner
Faculty Publications

Characterization of Carbohydrates During Early Diagenesis of Five Vascular Plant Tissues, Stephen Opsahl, Ronald Benner
Faculty Publications

Gender Differences in Brain and Behavior: Hormonal and Neural Bases, Sandra J. Kelly, N. L. Ostrowski, Marlene A. Wilson
Faculty Publications

The Ferric Uptake Regulation (Fur) Repressor Is a Zinc Metalloprotein, E. W. Althaus, Caryn E. Outten, K. E. Olson, H. Cao, T. V. O'Halloran
Faculty Publications

1998

Carbohydrates in Phytoplankton and Freshly Produced Dissolved Organic Matter, Andrew Biersmith, Ronald Benner
Faculty Publications

Quantification of N-(glucitol)ethanolamine and N-(carboxymethyl)serine: Two Products of Nonenzymatic Modification of Aminophospholipids Formed in Vivo, Wesley C. Fountain, Jesus R. Requena, Alicia J. Jenkins, Timothy J. Lyons, Brendan Smyth, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

Major Bacterial Contribution to Marine Dissolved Organic Nitrogen, Matthew D. McCarthy, John I. Hedges, Ronald Benner
Faculty Publications

Marine Phosphorus is Selectively Remineralized, Lauren Lisa Clark, Ellery D. Ingall, Ronald Benner
Faculty Publications

Presence of Dopa and Amino Acid Hydroperoxides in Proteins Modified With Advanced Glycation End Products (AGEs): Amino Acid Oxidation Products as a Possible Source of Oxidative Stress Induced by AGE Proteins, Shanlin Fu, Min-Xin Fu, John W. Baynes, Suzanne R. Thorpe, Roger T. Dean
Faculty Publications

1997

N-epsilon-(carboxyethyl)lysine, a Product of the Chemical Modification of Proteins by Methylglyoxal, Increases with Age in Human Lens Proteins, Mahtab U. Ahmed, Elisabeth B. Frye, Thorsten P. Degenhardt, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

Quantification of Malondialdehyde and 4-Hydroxynonenal Adducts to Lysine Residues in Native and Oxidized Human Low-Density Lipoprotein, Jesus R. Requena, Min-Xin Fu, Mahtab U. Ahmed, Alicia J. Jenkins, Timothy J. Lyons, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

1996

Bacterial Utilization of Different Size Classes of Dissolved Organic Matter, Rainer M. W. Amon, Ronald Benner
Faculty Publications

1995

Early Diagenesis of Vascular Plant Tissues: Lignin and Cutin Decomposition and Biogeochemical Implications, Stephen Opsahl, Ronald Benner
Faculty Publications

Pathways of Formation of Glycoxidation Products During Glycation of Collagen, Mary C. Wells-Knecht, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

Photochemical and Microbial Consumption of Dissolved Organic Carbon and Dissolved Oxygen in the Amazon River System, Rainer M.W. Amon, Ronald Benner
Faculty Publications

The 18O/16O of Dissolved Oxygen in Rivers and Lakes in the Amazon Basin: A Tracer of Respiration and Photosynthesis, Paul D. Quay, D. O. Wilbur, Jeffrey E. Richey, A. H. Devol, Ronald Benner, Bruce R. Forsberg
Faculty Publications

NE(Carboxymethyl)lysine Is a Dominant Advanced Glycation End Product (AGE) Antigen in Tissue Proteins, Sharanya Reddy, Johann Bichler, Kevin J. Wells-Knecht, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

Identification of Liver Endothelial Cells as the Primary Site of IgM Catabolism in the Rat, Zissis C. Chroneos, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

Metabolism of Fructose-3-Phosphate in the Diabetic Rat Lens, Sundeep Lal, Benjamin S. Szwergold, Anne H. Taylor, William C. Randall, Francis Kappler, Kevin Wells-Knecht, John W. Baynes, Truman R. Brown
Faculty Publications

Formation of Reactive Intermediates from Amadori Compounds Under Physiological Conditions, David V. Zyzak, John M. Richardson, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

1994

Mechanism of Autoxidative Glycosylation: Identification of Glyoxal and Arabinose as Intermediates in the Autoxidative Modification of Proteins by Glucose, Kevin J. Wells-Knecht, David V. Zyzak, John E. Litchfield, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

Plankton Respiration and Carbon Flux Through Bacterioplankton on the Louisiana Shelf, Bopaiah Biddanda, Stephen Opsahl, Ronald Benner
Faculty Publications

Origins and Processing of Organic Matter in the Amazon River as Indicated by Carbohydrates and Amino Acids, John I. Hedges, Gregory L. Cowie, Jeffrey E. Richey, Paul D. Quay, Ronald Benner, Mike Strom, Bruce R. Forsberg
Faculty Publications

1993

Catabolism of Hirudin and Thrombin-Hirudin Complexes in the Rat, Johann Bichler, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

Independence of Metal Binding Between Tandem Cys2His2 Zinc Finger Domains, Beth Allyn Krizek, Jeremy M. Berg, Laura E. Zawadzke
Faculty Publications

In Vivo Fate of Hemopexin and Heme-hemopexin Complexes in the Rat, David W. Potter, Zissis C. Chroneos, John W. Baynes, Peter R. Sinclair, Nadia Gorman, Heng H. Liem, Ursula Muller-Eberhard, Suzanne R. Thorpe
Faculty Publications

1992

Sythesis of N, N-dilactitol Ethylenediamine: A Versatile Spacer for Attachment of Residualizing Labels to Protein, Maria M. Dowd, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

1991

The Reaction of 3-Deoxy-D-Glycero-Pentos-2-Ulose ("3-Deoxyxylosone") with Aminoguanidine, Jan Hirsh, John W. Baynes, Jonathan A. Blackridge, Milton S. Feather
Faculty Publications

Diagenesis of Belowground Biomass of Spartina Alterniflora in Salt-Marsh Sediments, Ronald Benner, Marilyn L. Fogel, E. Kent Sprague
Faculty Publications

Detection of 3-Deoxyfructose and 3-Deoxyglucosone in Human Urine and Plasma: Evidence for Intermediate Stages of the Maillard Reaction In Vivo, Kevin J. Wells-Knecht, Milton S. Feather, John W. Baynes
Faculty Publications

Age-Dependent Accumulation of NE-(Carboxymethyl)lysine and NE-(Carboxymethyl)hydroxylysine in Human Skin Collagen, John A. Dunn
Faculty Publications

Neonatal Alcohol Exposure Alters Suckling Behavior in Neonatal Rat Pups, S. Barron, Sandra J. Kelly, E. P. Riley
Faculty Publications

1990

Effects of PH and Plant Sourceon Lignocellulose Biodegradation Rates in Two Wetland Ecosystems, the Okefenokee Swamp and a Georgia Salt Marsh, Mary Ann Moran, Robert E. Hodson
Faculty Publications

Reaction of Ascorbate with Lysine and Protein Under Autoxidizing Conditions: Formation of N-epsilon(carboxymethyl)lysine by Reaction Between Lysine and Products of Autoxidation of Ascorbate, John A. Dunn, Mahtab U. Ahmed, Martha H. Murtiashaw, John M. Richardson, Michael D. Walla, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

A Fluorescent Residualizing Label for Studies on Protein Uptake and Catabolism in Vivo and in Vitro, Janet L. Maxwell, Louis Terracio, Thomas K. Borg, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

1989

Non-Invasive Detection of Protein Metabolism in Vivo by N.M.R. Spectroscopy: Application of a Novel 19F-Containing Residualizing Label, Alan Daugherty, Nancy N. Becker, Linda A. Scherrer, Burton E. Sobel, Joseph J.H. Ackerman, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

Oxidation of Glycated Proteins: Age-Dependent Accumulation of N epsilon-(carboxymethyl)lysine in Lens Proteins, John A. Dunn, Jeffrey S. Patrick, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

1988

Carbon Conversion Efficiency for Bacterial Growth on Lignocellulose: Implications for Detritus-Based Food Webs, Ronald Benner, Jan Lay, Elizabeth K’nees, Robert E. Hodson
Faculty Publications

NMR Chemical Shifts and Intramolecular van der Waals Interactions: Carbonyl and Ether Systems, D. B. Chestnut, Daniel W. Wright, Beth A. Krizek
Faculty Publications

Carbon Flow From Lignocellulose: A Simulation Analysis of a Detritus-Based Ecosystem, Mary Ann Moran, Tarzan Legovic, Ronald Benner, Robert E. Hodson
Faculty Publications

Adaptation of Phytoplankton-Degrading Microbial Communities to Thermal Reactor Effluent in a New Cooling Reservoir, Steven A. Schoenberg, Ronald Benner, Patricia Sobecky, Robert E. Hodson
Faculty Publications

Purification of Residualizing Glycoconjugate Labels for Protein by Reversed-Phase High-Pressure Liquid Chromatography, John W. Baynes, Janet L. Maxwell, Kazi M. Rahman, Suzanne R. Thorpe
Faculty Publications

Degradation of Polysaccharides and Lignin by Ruminal Bacteria and Fungi, D. E. Akin, Ronald Benner
Faculty Publications

1986

Chemical Composition and In-Vitro Digestibility of Biologically Degraded Peanut Hulls, Thomas J. Kerr, Ronald Benner, Janet H. Woodward, William E. Rigsby, William R. Windham
Faculty Publications

Chemical Composition and In-Vitro Digestibility of Thermochemically Treated Peanut Hulls, Thomas J. Kerr, William R. Windham, Janet H. Woodward, Ronald Benner
Faculty Publications

Biogeochemical Cycling of Lignocellulosic Carbon in Marine and Freshwater Ecosystems: Relative Contributions of Procaryotes and Eucaryotes, Ronald Benner, Mary Ann Moran, Robert E. Hodson
Faculty Publications

1985

125I-Glycoconjugate Labels for Identifying Sites of Protein Catabolism In Vivo: Effect of Structure and Chemistry of Coupling to Protein on Label Entrapment in Cells After Protein Degradation, Jeffrey L. Strobel, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

1984

Relative Contributions of Bacteria and Fungi to the Degradation of Lignocellulosic Detritus in Salt Marsh Sediments, Ronald Benner, S. Y. Newell, A. E. Maccubbin, Robert E. Hodson
Faculty Publications

Anaerobic Biodegradation of the Lignin and Polysaccharide Components of Lignocellulose and Synthetic Lignin by Sediment Microflora, Ronald Benner, A. E. Maccubbin, Robert E. Hodson
Faculty Publications

Studies in Vivo of the Tissue Uptake, Cellular Distribution and Catabolic Turnover of Exogenous Glucocerebrosidase in Rat, Stefania Morrone, Peter G. Pentchev, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

1983

Isolation of a Bacterium Capable of Degrading Peanut Hull Lignin, Thomas J. Kerr, Robert D. Kerr, Ronald Benner
Faculty Publications

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Albumin Catabolism in Diabetic Rats, Martha H. Murtiashaw, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

Determination of the Specific Activity of NaB3H4, Martha H. Murtiashaw, Suzanne R. Thorpe, John W. Baynes
Faculty Publications

1982

Identification of the Sites of IgG Catabolism in the Rat, Lee A. Henderson, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

1981

Identification of the Sites of Albumin Catabolism in the Rat, John W. Baynes, Suzanne R. Thorpe
Faculty Publications

1978

The Effect of Alpha-Mannose-Terminal Oligosaccharides on the Survival of Glycoproteins in the Circulation: Rapid Uptake and Catabolism of Bovine Pancreatic Ribonuclease B by Nonparenchymal Cells of Rat Liver, Terry L. Brown, Lee A. Henderson, Suzanne R. Thorpe, John W. Baynes
Faculty Publications