Follow

Submissions from 2012

PDF

Detection and imaging of the free radical DNA in cells—Site-specific radical formation induced by Fenton chemistry and its repair in cellular DNA as seen by electron spin resonance, immuno-spin trapping and confocal microscopy, Suchandra Bhattacharjee, Saurabh Chatterjee, JinJie Jiang, Birandra K. Sinha, and Ronald P. Mason

P2X7 receptor-NADPH oxidase axis mediates protein radical formation and Kupffer cell activation in carbon tetrachloride-mediated steatohepatitis in obese mice, Saurabh Chatterjee, Ritu Rana, Jean Corbett, Maria B. Kadiiska, Joyce Goldstein, and Ronald P. Mason

Link

Amphipathic antibacterial agents using cationic methacrylic polymers with natural rosin as pendant group, Ying Chen, Perry A. Wilbon, Yung Pin Chen, Juhua Zhou, Mitzi Nagarkatti, Chunpeng Wang, Fuxiang Chu, Alan W. Decho, and Chuanbing Tang

Link

Ecotoxicity Test Methods for Engineered Nanomaterials: Practical Experiences and Recommendations from the Bench, Richard D. Handy, Geert Cornelis, Teresa Fernandes, Olga Tsyusko, Alan W. Decho, Tara Sabo-Attwood, Chris Metcalfe, Jeffery A. Stevens, Stephen J. Klaine, Albert A. Koelmans, and Nina Horne

Proteomic and Biochemical Evidence Support a Role for Transport Vesicles and Endosomes in Stress Response and Secondary Metabolism in Aspergillus parasiticus, John E. Linz, Anindya Chanda, Sung-Yong Hong, Douglas A. Whitten, Curtis Wilkerson, and Ludmila V. Roze

Link

Surface-functionalization effects on uptake of fluorescent polystyrene nanoparticles by model biofilms, Brian A. Nevius, Yung Pin Chen, John L. Ferry, and Alan W. Decho

Link

Robust antimicrobial compounds and polymers derived from natural resin acids, Jifu Wang, Yung Pin Chen, Kejian Yao, Perry A. Wilbon, Wujie Zhang, Lixia Ren, Juhua Zhou, Mitzi Nagarkatti, Chunpeng Wang, Fuxiang Chu, Xiaoming He, Alan W. Decho, and Chuanbing Tang

Submissions from 2011

Site-specific radical formation in DNA induced by Cu(II)-H2O2 oxidizing system, using ESR, immuno-spin trapping, LC-MS, and MS/MS, Suchandra Bhattacharjee, Leesa J. Deterding, Saurabh Chatterjee, JinJie Jiang, Marilyn Ehrenshaft, Olivier Lardinois, Dario C. Ramirez, Kenneth B. Tomer, and Ronald P. Mason

Oxidative stress induces protein and DNA radical formation in follicular dendritic cells of the gernminal center and modulates its cell death patterns in late sepsis, Saurabh Chatterjee, Olivier Lardinois, Suchandra Bhattacharjee, Jeff Tucker, Jean Corbett, Leesa Deterding, Marilyn Ehrenshaft, Marcelo G. Bonini, and Ronald P. Mason

Link

Chemical Challenges to Bacterial AHL Signaling in the Environment, Alan W. Decho, Rebecca L. Frey, and John L. Ferry

Compartmentalization and molecular traffic in secondary metabolism: A new understanding of established cellular processes, Ludmila V. Roze, Anindya Chanda, and John E. Linz

Stress-related Transcription Factor AftB Integrates Secondary Metabolism with Oxidative Stress Response in Aspergilli, Ludmila V. Roze, Anindya Chanda, Josephine Wee, Deena Awad, and John E. Linz

Submissions from 2010

Link

Extraction of high molecular weight DNA from microbial mats, Benjamin S. Bey, Erin B. Fichot, Gargi Dayama, Alan W. Decho, and R. Sean Norman

A Possible Role for Exocytosis in Aflatoxin Export in Aspergillus parasiticus, Anindya Chanda, Ludmila V. Roze, and John E. Linz

Link

Overview of biopolymer-induced mineralization: What goes on in biofilms?, Alan W. Decho

Link

Quorum sensing in natural environments: emerging views from microbial mats, Alan W. Decho, R. Sean Norman, and Pieter T. Visscher

Link

Reaction of N-Acylhomoserine Lactones with Hydroxyl Radicals: Rates, Products, and Effects on Signaling Activity, Rebecca L. Frey, Lijian He, Yiling Cui, Alan W. Decho, Tomohiro Kawaguchi, P. Lee Ferguson, and John L. Ferry

Biotinylated Analogue of the Spin-Trap 5,5-Dimethyl-1-pyrroline-N-oxide for the Detection of Low-Abundance Protein Radicals by Mass Spectrometry, Oliver M. Lardinois, Saurabh Chatterjee, Ronald P. Mason, Kenneth B. Tomer, and Leesa M. Deterding

Protein Radical Formation Resulting from Eosinophil Peroxidase-catalyzed Oxidation of Sulfite, Kalina Ranguelova, Saurabh Chatterjee, Marilyn Ehrenshaft, Dario C. Ramirez, Fiona A. Summers, Maria B. Kadiiska, and Ronald P. Mason

PDF

Volatile profiling reveals intracellular metabolic changes in Aspergillus parasticus: veA regulates branched chain amino acid and ethanol metabolism, Ludmila V. Roze, Anindya Chanda, Maris Laivenieks, Randolph M. Beaudry, Katherine A. Artymovich, Anna V. Koptina, Deena W. Awad, Dina Valeeva, Arthur D. Jones, and John E. Linz

Submissions from 2009

Link

Characteristics and turnover of exopolymeric substances in a hypersaline microbial mat, Olivier Braissant, Alan W. Decho, Kristen M. Przekop, Kimberley L. Gallagher, Christina Glunk, Christophe Dupraz, and Pieter T. Visscher

A key role for vesicles in fungal secondary metabolism, Anindya Chanda, Ludmila V. Roze, Suil Kang, Katherine A. Artymovich, Glenn R. Hicks, Natasha V. Raikhel, Ana M. Calvo, and John E. Linz

Purification of a vesicle-vacuole fraction functionally linked to aflatoxin synthesis in Aspergillus parasiticus, Anindya Chanda, Ludmila V. Roze, Alicia Pastor, Melinda K. Frame, and John E. Linz

Immuno-spin trapping of a post-translational carboxypeptidase B1 radical formed by a dual role of xanthine oxidase and endothelial nitric oxide synthase in acute septic mice, Saurabh Chatterjee, Marilyn Ehrenshaft, Suchandra Bhattacharjee, Leesa J. Deterding, Marcelo G. Bonini, Jean Corbett, Maria B. Kadiiska, Kenneth B. Tomer, and Ronald P. Mason

Link

Site-Specific Carboxypeptidase B1 Tyrosine Nitration and Pathophysiological Implications following Its Physical Association with Nitric Oxide Synthase-3 in Experimental Sepsis, Saurabh Chatterjee, Olivier Lardinois, Marcelo G. Bonini, Suchandra Bhattacharjee, Krisztian Stadler, Jean Corbett, Leesa J. Deterding, Kenneth B. Tomer, Maria Kadiiska, and Ronald P. Mason

Link

Autoinducers extracted from microbial mats reveal a suprising diversity of N-acylhomoserine lactones (AHLs) and abundance changes that may relate to diel pH, Alan W. Decho, Pieter T. Visscher, John L. Ferry, Tomohiro Kawaguchi, Lijian He, Kristen M. Przekop, R. Sean Norman, and R. Pamela Reid

Link

Processes of carbonate precipitation in modern microbial mats, Christophe Dupraz, R. Pamela Reid, Olivier Braissant, Alan W. Decho, R. Sean Norman, and Pieter T. Visscher

Link

Transfer of gold nanoparticles from the water column to the estuarine food web, John L. Ferry, Preston Craig, Cole Hexel, Patrick Sisco, Rebecca L. Frey, Paul L. Pennington, Michael H. Fulton, I. Geoff Scott, Alan W. Decho, Shosaku Kashiwada, Catherine J. Murphy, and Timothy J. Shaw

Link

Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay, Falicia Goh, Michelle A. Allen, Stefan Leuko, Tomohiro Kawaguchi, Alan W. Decho, Brendan P. Burns, and Brett A. Neilan

Submissions from 2008

Link

Development of a microplate-based fluorescence immunoassay using quantum dot streptavidin conjugates for enumeration of putative marine bacteria, Alteromonas sp., associated with a benthic harpacticoid copepod, Erin K. Beckman, Tomohiro Kawaguchi, G. Thomas Chandler, and Alan W. Decho

Link

Application of photostable quantum dots for indirect immunofluorescent detection of specific bacterial serotypes on small marine animals, Alan W. Decho, Erin M. Beckman, G. Thomas Chandler, and Tomohiro Kawaguchi

Link

Rapid Screening of Quorum-Sensing Signal N-Acyl Homoserine Lactones by an In Vitro Cell-Free Assay, Tomohiro Kawaguchi, Yung Pin Chen, R. Sean Norman, and Alan W. Decho

PDF

Light-Dependant Biostabilisation of Sediments by Stromatolite Assemblages, David M. Paterson, Rebecca J. Aspden, Pieter T. Visscher, Mireille Consalvey, Miriam S. Andres, Alan W. Decho, John F. Stolz, and R. Pamela Reid

Submissions from 2007

Link

Exopolymeric substances of sulfate-reducing bacteria: Interactions with calcium at alkaline pH and implication for formation of carbonate materials, Olivier Braissant, Alan W. Decho, Christophe Dupraz, Christina Glunk, Kristen M. Przekop, and Pieter T. Visscher

Synergistic Therapeutic Potential of Dexamethasone and L-arginine in Lipopolysaccharide-Induced Septic Shock, Saurabh Chatterjee, Sudha Premachandran, Jyoti Shukla, and T. B. Poduval

The initiation and pattern of spread of histone H4 acetylation parallel the order of transcriptional activation of genes in the aflatoxin cluster, Ludmila V. Roze, Anna E. Arthur, Sung-Yong Hong, Anindya Chanda, and John E. Linz

Submissions from 2006

Link

Sulfate reducing bacteria in microbial mats: Changing paradigms, new discoveries, L. K. Baumgartner, R. Pamela Reid, Christophe Dupraz, Alan W. Decho, D. H. Buckley, J. R. Spear, Kristen M. Przekop, and Pieter T. Visscher

Link

Arginine metabolic pathways determine its therapeutic benefit in experimental heatstroke: Role of Th1/Th2 cytokine balance, Saurabh Chatterjee, Sudha Premachandran, Raghavendra S. Bagewadikar, Sayanti Bhattacharya, Subrata Chattopadhyay, and T. B. Poduval

Submissions from 2005

Link

Influence of natural dissolved organic matter (DOM) on acute and chronic toxicity of the pesticides chlorothalonil, chlorpyrifos and fipronil and the meiobenthic estuarine copepod Amphiascus tenuiremis, Adriana C. Bejarano, G. Thomas Chandler, and Alan W. Decho

Link

The role of various dissolved organic matter forms on chlorpyrifos bioavailability to the estuarine bivalve Mercenaria mercenaria, Adriana C. Bejarano, Alan W. Decho, and G. Thomas Chandler

A modified, economic, sensitive method for measuring total antioxidant capacities of human plasma and natural compounds using Indian saffron (Crocus sativus), Saurabh Chatterjee, T. Balakrishna Poduval, Jai C. Tilak, and Thomas P. A. Devasagayam

Link

Therapeutic Treatment with L-Arginine Rescues Mice from Heat Stroke-Induced Death: Physiological and Molecular Mechanisms, Saurabh Chatterjee, Sudha Premachandran, Deepak Sharma, Raghavendra S. Bagewadikar, and T. B. Poduval

Link

Production and cycling of natural microbial exopolymers (EPS) within a marine stromatolite, Alan W. Decho, Pieter T. Visscher, and R. Pamela Reid

Role of tumor-derived transforming growth factor-β1 (TGF-β1) in site-dependent tumorigenicity of murine ascitic lymphosarcoma, V. S. Thakur, B. Shankar, Saurabh Chatterjee, S. Premachandran, and K. B. Sainis

Submissions from 2004

Link

Reconstruction and computation of microscale biovolumes using geographical information systems: potential difficulties, Alexandru I. Petrisor, Adrian Cuc, and Alan W. Decho

Link

Using geographical information techniques to quantify the spatial structure of endolithic boring processes within sediment grains of marine stromatolites, Alexandru I. Petrisor and Alan W. Decho

Link

Quantifying CaCO3 Microprecipitates Within Developing Surface Mats of Marine Stromatolites Using GIS and Digital Image Analysis, Alexandru I. Petrisor, Tomohiro Kawaguchi, and Alan W. Decho

Submissions from 2003

Link

Bioavailability of the Organophosphorous Insecticide Chlorpyrifos to the Suspension-Feeding Bivalve, Mercenaria mercenaria, Following Exposure to Dissolved and Particulate Matter, Adriana C. Bejarano, Anneli Widenfalk, Alan W. Decho, and G. Thomas Chandler

Link

Sediment properties influencing upwelling spectral reflectance signatures: The "biofilm gel effect", Alan W. Decho, Tomohiro Kawaguchi, Mead A. Allison, Eric M. Louchard, R. Pamela Reid, F. Carol Stephens, Kenneth J. Voss, Robert A. Wheatcroft, and Brenton B. Taylor

PDF

Utilization of algal and bacterial extracellular polymeric secretions (EPS) by the deposit-feeding brittlestar Amphipholis gracillima (Echinodermata), D. L. Hoskins, S. E. Stancyk, and Alan W. Decho

Link

Development of an Indirect Competitive Enzyme-Linked Immunosorbent Assay to Detect Extracellular Polymeric Substances (EPS) Secreted by the Marine Stromatolite-Forming Cyanobacteria, Schizothrix sp., Tomohiro Kawaguchi, Husain Ala Sayegh, and Alan W. Decho

Effect of nitric oxide on mortality of mice after whole body hyperthermia, T. B. Poduval, Saurabh Chatterjee, and K. B. Sainis

Submissions from 2002

Link

A laboratory investigation of cyanobacterial extracellular polymeric secretions (EPS) in influencing CaCO3 polymorphism, Tomohiro Kawaguchi and Alan W. Decho

Link

In Situ Analysis of Carboxyl and Sulfhydryl Groups of Extracellular Polymeric Secretions by Confocal Laser Scanning Microscopy, Tomohiro Kawaguchi and Alan W. Decho

Link

In Situ Microspatial Imaging Using Two-Photon and Confocal Laser Scanning Microscopy of Bacteria and Extracellular Polymeric Secretions (EPS) Within Marine Stromatolites, Tomohiro Kawaguchi and Alan W. Decho

Link

Isolation and Biochemical Characterization of Extracellular Polymeric Secretions (EPS) from Modern Soft Marine Stromatolites (Bahamas) and Its Inhibitory Effect on CaCO3 Precipitation, Tomohiro Kawaguchi and Alan W. Decho

Submissions from 2000

Link

Microbial biofilms in intertidal systems: an overview, Alan W. Decho

PDF

Proteolytic enzymes in the marine bacterium Pseudoalteromonas atlantica: post-secretional activation and effects of environmental conditions, Monica Hoffman and Alan W. Decho

Link

Biochemical Characterization of Cyanobacterial Extracellular Polymers (EPS) from Modern Marine Stromatolites (Bahamas), Tomohiro Kawaguchi and Alan W. Decho

Link

The role of microbes in accretion, lamination and early lithification of modern marine stromatolites, R. Pamela Reid, Pieter T. Visscher, Alan W. Decho, John L. Ferry, B. M. Bebout, Christophe Dupraz, I. G. Macintyre, H. W. Paerl, J. L. Pinckney, L. Prufert-Bebout, T. F. Steppe, and D. J. DesMarais

Link

Bioavailability of particle-associated silver, cadmium, and zinc to the estuarine amphipod Leptocheirus plumulosus through dietary ingestion, Christian E. Schlekat, Alan W. Decho, and G. Thomas Chandler

Submissions from 1999

Link

Imaging an alginate polymer gel matrix using atomic force microscopy, Alan W. Decho

Link

Confocal Imaging of In Situ Natural Microbial Communities and Their Extracellular Polymeric Secretions Using Nanoplast® Resin, Alan W. Decho and Tomohiro Kawaguchi

PDF

Dietary assimilation of cadmium associated with bacterial exopolymer sediment coatings by the estuarine amphipod Leptocheirus plumulosus: effects of Cd concentration and salinity, Christian E. Schlekat, Alan W. Decho, and G. Thomas Chandler

Submissions from 1998

Link

Chemical cues: Why basic peptides are signal molecules in marine environments, Alan W. Decho, Kenneth A. Browne, and Richard K. Zimmer-Faust

Link

Sorption of Cadmium to Bacterial Extracellular Polymeric Sediment Coatings Under Estuarine Conditions, Christian E. Schlekat, Alan W. Decho, and G. Thomas Chandler

Submissions from 1996

Link

Flexible digestion strategies and trace metal assimilation in marine bivalves, Alan W. Decho and Samuel N. Luoma

Submissions from 1995

Link

Microbial activities and the transformation of organic matter within mucilaginous material, Alan W. Decho and Gerhard J. Herndl

Submissions from 1994

PDF

Humic and fulvic acids: sink or source in the availability of metals to the marine bivalves Macoma balthica and Potamocorbula amurensis?, Alan W. Decho and Samuel N. Luoma

Submissions from 1993

Link

Exopolymer microenvironments of microbial flora: Multiple and interactive effects on trophic relationships, Alan W. Decho and Glenn R. Lopez

Submissions from 1991

PDF

Time-courses in the retention of food material in the bivalves Potamocorbula amurensis and Macoma balthica: significance to the absorption of carbon and chromium, Alan W. Decho and Samuel N. Luoma

Submissions from 1990

Link

Bacterial exopolymer utilization by a harpacticoid copepod: A methodology and results, Alan W. Decho and David J. W. Moriarty

Submissions from 1988

PDF

How do harpacticoid grazing rates differ over a tidal cycle? Field verification using chlorophyll-pigment analyses, Alan W. Decho

Submissions from 1986

PDF

Water-cover influences on diatom ingestion rates by meiobenthic copepods, Alan W. Decho

Submissions from 1985

Meiofauna-sediment interactions around subtropical seagrass sediments using factor analysis, Alan W. Decho, W. D. Hummon, and John W. Fleeger